Publications
- Koo, J., Lee, G., Ka, D., Park, C., Suh, J.Y. & Bae, E.* (2023) Biochemical characterization of type I-E anti-CRISPR proteins, AcrIE2 and AcrIE4. Appl. Biol. Chem. 66, 51.
- Park, H.S., Jeon, J.H., Cho, W., Lee, Y., Park, J.Y., Kim, J., Park, Y.S., Koo, H.J., Kang, J.H., Lee, T.J., Kim, S.H., Kim, J.B., Kwon, H.Y., Kim, S.H., Paek, N.D., Jang, G., Suh, J.Y. & Yang, T.J.* (2023) High-throughput discovery of plastid genes causing albino phenotypes in ornamental chimeric plants. Hortic. Res. 10, uhac246.
- Suh, J.Y.* & Hong, S.H. (2022) A practical approach to handling protein samples under degradation. J. Kor. Mag. Reson. Soc. 26, 66-70.
- Nguyen, K. T., Mun, S. H., Yang, J., Lee, J., Seok, O. H., Kim, E., Kim, D., An, S. Y., Seo, D. Y., Suh, J.Y., Lee, Y.* & Hwang, C. S.* (2022) The MARCHF6 E3 ubiquitin ligase acts as an NADPH sensor for the regulation of ferroptosis. Nat. Cell Biol. 24, 1239-1251.
- Hong, S. H.#, Lee, G.#, Park, C., Koo, J., Kim, E. H., Bae, E.* & Suh, J.Y.* (2022) The structure of AcrIE4-F7 reveals a common strategy for dual CRISPR inhibition by targeting PAM recognition sites. Nucleic Acids Res. 50, 2363-2376.
- Choi, H.J., Kim, Y.M., Suh, J.Y. & Han, J.Y.* (2021) Beneficial effect on rapid skin wound healing through carboxylic acid-treated chicken eggshell membrane. Mater. Sci. Eng. C 128, 112350.
- Kim, I. & Suh, J.Y.* (2021) Backbone assignment and structural analysis of anti-CRISPR AcrIF7 from Pseudomonas aeruginosa prophages. J. Kor. Mag. Reson. Soc. 25, 39-44.
- Park, Y.H., Woo, S.J., Chungu, K., Lee, S.B., Shim, J.H., Lee, H.J., Kim, I., Rengaraj, D., Song, C.S., Suh, J.Y., Lim, J.M. & Han, J. Y.* (2021) Asp149 and Asp152 in chicken and human ANP32A play an essential role in the interaction with influenza viral polymerase. FASEB J. 35, e21630.
- Kim, Y., Lee, S.J., Park, C., Koo, J., Bae, E., Lee, B.J. & Suh, J.Y.* (2021) Structural investigation of self-assembly and target binding of anti-CRISPR AcrIIC2. CRISPR J. 4, 448-458.
- An, S.Y., Kim, E.H., Bae, E. & Suh, J.Y.* (2020) Backbone NMR assignments of the anti-CRISPR AcrIIA5 from phages infecting Streptococcus thermophilus. J. Kor. Mag. Reson. Soc. 24, 70-76.
- Kim, I.#, Koo, J.#, An, S.Y.#, Hong, S., Ka, D., Kim, E.H., Bae, E.* & Suh, J.Y.* (2020) Structural and mechanistic insights into the CRISPR inhibition of AcrIF7. Nucleic Acids Res. 48, 9959-9968.
- An, S.Y., Ka, D., Kim, I., Kim, E.H., Kim, N.K., Bae, E. & Suh, J.Y.* (2020) Intrinsic disorder is essential for Cas9 inhibition of anti-CRISPR AcrIIA5. Nucleic Acids Res. 48, 7584-7594.
- Kim, Y.#, Park, C.#, Cha, S.#, Han, M., Ryu, K.S.* & Suh, J.Y.* (2020) Determinants of PB1 domain interactions in auxin response factor ARF5 and repressor IAA17. J. Mol. Biol. 432, 4010-4022.
- Han, J.#, Kim, I.#, Park, J.H., Yun, J.H., Joo, K., Kim, T., Park, G.Y., Ryu, K.S., Ko, Y.J., Mizutani, K., Park, S.Y., Seong, R.H., Lee, J.*, Suh, J.Y.* & Lee, W.* (2020) A coil-to-helix transition serves as a binding Motif for hSNF5 and BAF155 interaction. Int. J. Mol. Sci. 21, 2452.
- Kim, Y.#, Lee, S.J.#, Yoon, H.J., Kim, N.K., Lee, B.J.* & Suh, J.Y.* (2019) Anti-CRISPR AcrIIC3 discriminates between Cas9 orthologs via targeting the variable surface of the HNH nuclease domain. FEBS J. 286, 4661-4674.
- Highligted as Editor's Choice
- Lee, K.O.#, Kong, M.#, Kim, I.#, Bai, J., Cha, S., Kim, B., Ryu, K.S.*, Ryu, S.* & Suh, J.Y.* (2019) Structural basis for cell wall recognition by bacteriophage PBC5 endolysin. Structure 27, 1355-1365.
- Highlighted in Previews by Buck M. and Gerken T. (2019) Structure 27, 1350-1351
- Kim, I., Kim, N.K. & Suh, J.Y.* (2018) 1H, 15N, and 13C Resonance Assignments of the Anti-CRISPR AcrIIA4 from Listeria monocytogenes Prophages. J. Kor. Mag. Reson. Soc. 22, 71-75.
- Yong, H.I., Han, M., Kim, H.J., Suh, J.Y. & Jo C.* (2018) Mechanism Underlying Green Discolouration of Myoglobin Induced by Atmospheric Pressure Plasma. Sci. Rep. 8:9790.
- Ha, J.H., Hauk, P., Cho, K., Eo, Y., Ma, X., Stephens, K., Cha, S., Jeong, M., Suh, J.Y., Sintim, H.O.*, Bentley, W.E.* & Ryu, K.S.* (2018) Evidence of link between quorum-sensing and sugar metabolism in Escherichia coli revealed via co-crystal structure of LsrK and HPr. Sci. Adv. 4:eaar7063.
- An, S.Y., Kim, E.H. & Suh, J.Y.* (2018) Facilitated protein-protein association via alternative target search pathways visualized by NMR paramagnetic relaxation enhancement. Structure 26, 887-893.
- Kim, Y.M., Park, J.S., Kim, S.K., Jung, K.M., Hwang, Y.S., Han, M., Lee, H.J., Seo, H.W., Suh, J.Y., Han, B.K. & Han, J.Y.* (2018) The transgenic chicken derived anti-CD20 monoclonal antibodies exhibits greater anti-cancer therapeutic potential with enhanced Fc effector functions. Biomaterials 167, 58-68.
- Kim, I., Jeong, M., Ka, D., Han, M., Kim, N.K., Bae, E. & Suh, J.Y.* (2018) Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor, Sci. Rep. 8:3883.
- Hong, S., Ka, D., Yoon, S.J., Suh, N., Jeong, M., Suh, J.Y. & Bae, E.* (2018) CRISPR RNA and anti-CRISPR protein binding to the Xanthomonas albilineans Csy1-Csy2 heterodimer in the type I-F CRISPR-Cas system. J. Biol. Chem. 293, 2744-2754.
- Choi, H.J.#, Kim, I.#, Lee, H.J., Park, Y.H., Suh, J.Y.* & Han, J.Y.* (2018) Chicken NANOG self-associates via a novel folding-upon-binding mechanism. FASEB J. 32, 2563-2573.
- Jeong, M., Kim, I., Kim, G., Ka, D., Kim, N.K., Bae, E., Ryu, K.S.* & Suh, J.Y.* (2018) Solution structure and dynamics of Xanthomonas albilineans Cas2 for the mechanistic insight of nuclease activity. FEBS Lett. 592, 147-155.
- Ka, D.#, An, S.Y.#, Suh, J.Y.* & Bae E.* (2018) Crystal structure of an anti-CRISPR protein, AcrIIA1. Nucleic Acids Res. 46, 485-492.
- Lee, H.J., Lee, K.Y., Jung, K.M., Park, K.J., Lee, K.O., Suh, J.Y., Yao, Y., Nair, V., & Han, J.Y.* (2017) Precise gene editing of chicken Na+/H+ exchange type 1 (chNHE1) confers resistance to avian leukosis virus subgroup J (ALV-J). Dev. Comp. Immunol. 77, 340-349.
- Lee, K.O.#, Yun, Y.J.#, Kim, I. & Suh, J.Y.* (2017) Dimerization facilitates the conformational transitions for enzyme I autophosphorylation in an allosteric manner. FEBS Open Bio 7, 1208-1216.
- Ka, D., Hong, S., Jeong, U., Jeong, M., Suh, N., Suh, J.Y. & Bae, E.* (2017) Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity. Struct. Dynam. 4, 054701.
- Lee, K.O. & Suh, J.Y.* (2017) Backbone Assignment of Phosphorylated Cytoplasmic Domain B of Mannitol Transporter IIMtl in Thermoanaerobacter Tengcongensis. J. Kor. Mag. Reson. Soc. 21, 20-25.
- Kim, I.*, Lee, K.O.*, Yun, Y.J., Jung, J.Y., Kim, E.H., Cheong, H., Ryu, K.S., Kim, N.K. & Suh, J.Y.* (2017) Biophysical characterization of Ca2+-binding of S100A5 and Ca2+-induced interaction with RAGE. Biochem. Biophys. Res. Commun. 483, 332-338.
- Lee, K.O., Kim, E.H., Kim, G., Jung, J.Y., Katayama, S., Nakamura, S. & Suh, J.Y.* (2016) Biophysical characterization of the domain association between cytosolic A and B domains of the mannitol transporter enzymes IIMtl in the presence and absence of a connecting linker. Protein Sci. 25, 1803-1811.
- Kim, K., Heo, D.H., Kim, I., Suh, J.Y. & Kim, M.* (2016) Exosome Cofactors Connect Transcription Termination to RNA Processing by Guiding Terminated Transcripts to the Appropriate Exonuclease within the Nuclear Exosome. J. Biol. Chem. 291, 13229-13242.
- Han, M. & Suh, J.Y.* (2015) Dynamics of the mobile insert helix in the domain III-IV of Aux/IAA17 probed by site-directed spin labeling and paramagnetic NMR spectroscopy. J. Kor. Mag. Reson. Soc. 19, 61-66.
- Lee, K.O. & Suh, J.Y.* (2015) 1H, 15N, and 13C backbone assignments and secondary structure of the cytoplasmic domainA of mannitol trasporter IIMannitol from Thermoanaerobacter Tencongensis phosphotransferase system. J. Kor. Mag. Reson. Soc. 19, 42-48.
- Jeon, W., Ban, C., Park, G., Yu, T.K., Suh, J.Y., Woo, H.C. & Kim, D.H.* (2015) Catalytic Hydrothermal Conversion of Macroalgae-derived Alginate: Effect of pH on Production of Furfural and Valuable Organic Acids under Subcritical Water Conditions. J. Mol. Catal. A 399, 106-113.
- Han, M., Park, Y., Kim, I., Kim, E.H., Yu, T.K., Rhee, S.* & Suh, J.Y.* (2014) Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17. Proc. Natl. Acad. Sci. USA 111, 18613-18618.
- Suh, J.Y.*, Yu, T.K., Yun, Y.J. & Lee, K.O. (2014) NMR Studies on Transient Protein Complexes: Perspectives. J. Kor. Magn. Reson. Soc. 18, 1-4.
- Yu, T.K., Shin, S.A., Kim, E.H., Kim, S., Ryu, K.S., Cheong, H., Ahn, H.C., Jon, S. & Suh, J.Y.* (2014) An Unusual Protein-Protein Interaction through Coupled Unfolding and Binding. Angew. Chem. Int. Ed. Engl. 53 9784-9787.
- Highlighted as and inside back cover picture
- Im, H., Jang, S.B., Pathak, C., Yang, Y.J., Yoon, H.J., Yu, T.K., Suh, J.Y. & Lee, B.J.* (2014) Crystal structure of toxin HP0892 from Helicobacter pylori with two Zn(II) at 1.8 Å resolution. Protein Sci. 23, 819-832.
- Farrand, L., Kim, J.Y., Byun, S., Im-Aram, A., Lee, J., Suh, J.Y., Lee, K.W., Lee, H.J. & Tsang, B.K.* (2014) The diarylheptanoid hirsutenone sensitizes chemoresistant ovarian cancer cells to cisplatin via modulation of Apoptosis Inducing Factor and X-linked Inhibitor of Apoptosis. J. Biol. Chem. 289, 1723-1731.
- Farrand, L., Kim, J.Y., Im-Aram, A., Suh, J.Y., Lee, H.J., & Tsang, B.K.* (2013) An Improved Quantitative Approach for the Assessment of Mitochondrial Fragmentation in Chemoresistant Ovarian Cancer Cells. PLoS ONE 8, e74008.
- Yun, Y.J., Choi, B.S., Kim, E.H. & Suh, J.Y.* (2013) Thermodynamic Dissection of Large-Scale Domain Motions Coupled with Ligand Binding of Enzyme I. Protein Sci. 22, 1602-1611.
- Farrand, L., Byun, S., Kim, J.Y., Im-Aram, A., Lee, J., Lim, S., Lee, K.W., Suh, J.Y., Lee, H.J. & Tsang, B. K.* (2013) Piceatannol enhances cisplatin sensitivity in ovarian cancer via modulation of p53, XIAP and mitochondrial fission. J. Biol. Chem. 288, 23740-23750.
- Yu, T.K., Yun, Y.J., Lee, K.O. & Suh, J.Y.* (2013) Probing Target Search Pathways during Protein-Protein Association by Rational Mutations based on Paramagnetic Relaxation Enhancement. Angew. Chem. Int. Ed. Engl. 52, 3384-3388.
- Yun, Y.J. & Suh, J.Y.* (2012) Calorimetric and spectroscopic investigation of the interaction between the C-terminal domain of Enzyme I and its ligands. Protein Sci. 21, 1726-1733.
- Ali, A.Y., Farrand, L., Kim, J.Y., Byun, S., Suh, J.Y., Lee, H.J. & Tsang, B.K.* (2012) Molecular determinants of ovarian cancer chemoresistance: New insights into an old conundrum. Ann. N.Y. Acad. Sci. 1271, 58-67.
- Yu, T.K., Yun, Y.J., Lee, K.O., Ahn, K.J. & Suh, J.Y.* (2012) Active Site Phosphoryl Groups in the Biphosphorylated Phosphotransferase Complex Reveal Dynamics in a Millisecond Time Scale. FEBS Lett. 586, 1439-1444.
- Kim, S., Kim, D., Jung, H.H., Lee, I. H, Kim, J.I., Suh, J.Y. & Jon, S.* (2012) Bio-Inspired Design and Potential Biomedical Applications of a Novel Class of High-Affinity Peptides. Angew. Chem. Int. Ed. Engl. 51, 1890-1894.
- Kang, H., Suh, J.Y., Jung, Y.S., Jung, J.W., Kim, M.K. & Chung J.H.* (2011) Peptide Switch Is Essential for Sirt1 Deacetylase Activity. Mol. Cell 44, 203-213.
- Schwieters, C.D., Suh, J.Y., Grishaev, A., Ghirlando, R., Takayama, Y. & Clore, G.M. (2010) Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small and wide angle X-ray scattering. J. Am. Chem. Soc. 132, 13026-13045.
- Highlighted in (2010) 88, 12.
- Doucleff, M., Fawzi, N., Suh, J.Y. & Clore, G.M. (2010) Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements. Proc. Natl. Acad. Sci. USA. 107, 1379-1384.
- Highlighted in
- Ryabov, Y., Suh, J.Y., Grishaev, A., Clore, G.M. & Schwieters, C.D. (2009) Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes. J. Am. Chem. Soc. 131, 9522-9531.
- Tang, C., Louis, J.M., Aniana, A., Suh, J.Y. & Clore, G.M. (2008) Visualizing early events in HIV-1 protease auto-processing by paramagnetic NMR. Nature 455, 693-696.
- Highlighted in
- Suh, J.Y., Cai, M. & Clore, G.M. (2008) Impact of phosphorylation on structure and thermodynamics of the interaction between the N-terminal domain of enzyme I and the histidine phosphocarrier protein of the bacterial phosphotransferase system. J. Biol. Chem. 283, 18980-18989.
- Suh, J.Y., Tang, C. & Clore, G.M. (2007) Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement. J. Am. Chem. Soc. 129, 12954- 12955.
- Suh, J.Y., Iwahara, J. & Clore, G.M. (2007) Intramolecular domain-domain association/ dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled. Proc. Natl. Acad. Sci. USA. 104, 3153-3158.
- Cai, M., Ying, F., Suh, J.Y., Louis, J.M., Ghirlando, R., Craigie, R. & Clore, G.M. (2007) Solution NMR structure of the barrier-to-autointegration factor/emerin complex. J. Biol. Chem. 282, 14525-14535.
- Suh, J.Y., Cai, M., Williams Jr., D.C. & Clore, G.M. (2006) Solution structure of a post-transition state analog of the phosphotransfer reaction between the A and B cytoplasmic domains of the mannitol transporter II mannitol of the Escherichia coli phosphotransferase system. J. Biol. Chem. 281, 8939-8949.
- Suh, J.Y., Tang, C., Cai, M., & Clore, G.M. (2005) Visualization of the phosphorylated active site of the loop of the cytoplamic B domain of the mannitol transporter IIMannitol of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings. J. Mol. Biol. 353, 1129-1136.
- Williams Jr., D.C., Cai, M., Suh, J.Y., Peterkofsky, A. & Clore, G.M. (2005) Solution NMR structure of the 48 kDa IIAmannose-HPr complex of the Escherichia coli mannose phosphotransferase system. J. Biol. Chem. 280, 20775-20784.
- Suh, J.Y. & Choi, B.S. (2004) Implications of the periodicity in NMR chemical shifts and temperature coefficients of amide protons in helical peptides. J. Kor. Mag. Reson. Soc. 8, 127-138.
- Suh, J.Y., Spyracopoulos, L., Keizer, D.W., Irvin, R.T. & Sykes, B.D. (2001) Backbone dynamics of receptor binding and antigenic regions of a Pseudomonas aeruginosa pilin monomer. Biochemistry 40, 3985-3995.
- Keizer, D.W., Kalisiak, M., Crump., M.P., Suh, J.Y., Irvin, R.T. & Sykes, B.D. (2001) Assignments of 1H and 15N resonances of the Pseudomonas aeruginosa K122-4 pilin monomer. J. Biomol. NMR 19, 385-386.
- Suh, J.Y., Lee, Y.T., Park, C.B., Lee, K.H., Kim, S.C. & Choi, B.S. "Structural and functional implications of a proline residue in the antimicrobial peptide gaegurin. Eur. J. Biochem. 266, 665-674.
- Lee, Y.T., Kim, D.H., Suh, J.Y., Chung, J.H., Lee, B.L., Lee, Y. & Choi, B.S. (1999) Structural characteristics of tenecin 3, an insect antifungal protein. Biochem. Mol. Biol. Int. 47, 369-376.
- Suh, J.Y., Lee, K.H., Chi, S.W., Hong, S.Y., Choi, B.W., Moon, H.M. & Choi, B.S. (1996) Unusually stable helical kink in the antimicrobial peptide - a derivative of gaegurin. FEBS Lett. 392, 309-312.
- Suh, J.Y. & Choi, B.S. (1996) Implication of secondary structure of bradykinin in membrane mimic solution investigated by NMR spectroscopy. Bull. Korean. Chem. Soc. 17, 671-673.
- Chi, S.W., Yi, G.S., Suh, J.Y., Choi, B.S. & Kim, H. (1995) Structures of revertant signal sequences of Escherichia coli ribose binding protein. Biophys J. 69, 2703-2709.