Publications

  1. Koo, J., Lee, G., Ka, D., Park, C., Suh, J.Y. & Bae, E.* (2023) Biochemical characterization of type I-E anti-CRISPR proteins, AcrIE2 and AcrIE4. Appl. Biol. Chem. 66, 51.

  2. Park, H.S., Jeon, J.H., Cho, W., Lee, Y., Park, J.Y., Kim, J., Park, Y.S., Koo, H.J., Kang, J.H., Lee, T.J., Kim, S.H., Kim, J.B., Kwon, H.Y., Kim, S.H., Paek, N.D., Jang, G., Suh, J.Y. & Yang, T.J.* (2023) High-throughput discovery of plastid genes causing albino phenotypes in ornamental chimeric plants. Hortic. Res. 10, uhac246.

  3. Suh, J.Y.* & Hong, S.H. (2022) A practical approach to handling protein samples under degradation. J. Kor. Mag. Reson. Soc. 26, 66-70.

  4. Nguyen, K. T., Mun, S. H., Yang, J., Lee, J., Seok, O. H., Kim, E., Kim, D., An, S. Y., Seo, D. Y., Suh, J.Y., Lee, Y.* & Hwang, C. S.* (2022) The MARCHF6 E3 ubiquitin ligase acts as an NADPH sensor for the regulation of ferroptosis. Nat. Cell Biol. 24, 1239-1251.

  5. Hong, S. H.#, Lee, G.#, Park, C., Koo, J., Kim, E. H., Bae, E.* & Suh, J.Y.* (2022) The structure of AcrIE4-F7 reveals a common strategy for dual CRISPR inhibition by targeting PAM recognition sites. Nucleic Acids Res. 50, 2363-2376.

  6. Choi, H.J., Kim, Y.M., Suh, J.Y. & Han, J.Y.* (2021) Beneficial effect on rapid skin wound healing through carboxylic acid-treated chicken eggshell membrane. Mater. Sci. Eng. C 128, 112350.

  7. Kim, I. & Suh, J.Y.* (2021) Backbone assignment and structural analysis of anti-CRISPR AcrIF7 from Pseudomonas aeruginosa prophages. J. Kor. Mag. Reson. Soc. 25, 39-44.

  8. Park, Y.H., Woo, S.J., Chungu, K., Lee, S.B., Shim, J.H., Lee, H.J., Kim, I., Rengaraj, D., Song, C.S., Suh, J.Y., Lim, J.M. & Han, J. Y.* (2021) Asp149 and Asp152 in chicken and human ANP32A play an essential role in the interaction with influenza viral polymerase. FASEB J. 35, e21630.

  9. Kim, Y., Lee, S.J., Park, C., Koo, J., Bae, E., Lee, B.J. & Suh, J.Y.* (2021) Structural investigation of self-assembly and target binding of anti-CRISPR AcrIIC2. CRISPR J. 4, 448-458.

  10. An, S.Y., Kim, E.H., Bae, E. & Suh, J.Y.* (2020) Backbone NMR assignments of the anti-CRISPR AcrIIA5 from phages infecting Streptococcus thermophilus. J. Kor. Mag. Reson. Soc. 24, 70-76.

  11. Kim, I.#, Koo, J.#, An, S.Y.#, Hong, S., Ka, D., Kim, E.H., Bae, E.* & Suh, J.Y.* (2020) Structural and mechanistic insights into the CRISPR inhibition of AcrIF7. Nucleic Acids Res. 48, 9959-9968.

  12. An, S.Y., Ka, D., Kim, I., Kim, E.H., Kim, N.K., Bae, E. & Suh, J.Y.* (2020) Intrinsic disorder is essential for Cas9 inhibition of anti-CRISPR AcrIIA5. Nucleic Acids Res. 48, 7584-7594.

  13. Kim, Y.#, Park, C.#, Cha, S.#, Han, M., Ryu, K.S.* & Suh, J.Y.* (2020) Determinants of PB1 domain interactions in auxin response factor ARF5 and repressor IAA17. J. Mol. Biol. 432, 4010-4022.

  14. Han, J.#, Kim, I.#, Park, J.H., Yun, J.H., Joo, K., Kim, T., Park, G.Y., Ryu, K.S., Ko, Y.J., Mizutani, K., Park, S.Y., Seong, R.H., Lee, J.*, Suh, J.Y.* & Lee, W.* (2020) A coil-to-helix transition serves as a binding Motif for hSNF5 and BAF155 interaction. Int. J. Mol. Sci. 21, 2452.

  15. Kim, Y.#, Lee, S.J.#, Yoon, H.J., Kim, N.K., Lee, B.J.* & Suh, J.Y.* (2019) Anti-CRISPR AcrIIC3 discriminates between Cas9 orthologs via targeting the variable surface of the HNH nuclease domain. FEBS J. 286, 4661-4674.
    - Highligted as Editor's Choice

  16. Lee, K.O.#, Kong, M.#, Kim, I.#, Bai, J., Cha, S., Kim, B., Ryu, K.S.*, Ryu, S.* & Suh, J.Y.* (2019) Structural basis for cell wall recognition by bacteriophage PBC5 endolysin. Structure 27, 1355-1365.
    - Highlighted in Previews by Buck M. and Gerken T. (2019) Structure 27, 1350-1351

  17. Kim, I., Kim, N.K. & Suh, J.Y.* (2018) 1H, 15N, and 13C Resonance Assignments of the Anti-CRISPR AcrIIA4 from Listeria monocytogenes Prophages. J. Kor. Mag. Reson. Soc. 22, 71-75.

  18. Yong, H.I., Han, M., Kim, H.J., Suh, J.Y. & Jo C.* (2018) Mechanism Underlying Green Discolouration of Myoglobin Induced by Atmospheric Pressure Plasma. Sci. Rep. 8:9790.

  19. Ha, J.H., Hauk, P., Cho, K., Eo, Y., Ma, X., Stephens, K., Cha, S., Jeong, M., Suh, J.Y., Sintim, H.O.*, Bentley, W.E.* & Ryu, K.S.* (2018) Evidence of link between quorum-sensing and sugar metabolism in Escherichia coli revealed via co-crystal structure of LsrK and HPr. Sci. Adv. 4:eaar7063.

  20. An, S.Y., Kim, E.H. & Suh, J.Y.* (2018) Facilitated protein-protein association via alternative target search pathways visualized by NMR paramagnetic relaxation enhancement. Structure 26, 887-893.

  21. Kim, Y.M., Park, J.S., Kim, S.K., Jung, K.M., Hwang, Y.S., Han, M., Lee, H.J., Seo, H.W., Suh, J.Y., Han, B.K. & Han, J.Y.* (2018) The transgenic chicken derived anti-CD20 monoclonal antibodies exhibits greater anti-cancer therapeutic potential with enhanced Fc effector functions. Biomaterials 167, 58-68.

  22. Kim, I., Jeong, M., Ka, D., Han, M., Kim, N.K., Bae, E. & Suh, J.Y.* (2018) Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor, Sci. Rep. 8:3883.

  23. Hong, S., Ka, D., Yoon, S.J., Suh, N., Jeong, M., Suh, J.Y. & Bae, E.* (2018) CRISPR RNA and anti-CRISPR protein binding to the Xanthomonas albilineans Csy1-Csy2 heterodimer in the type I-F CRISPR-Cas system. J. Biol. Chem. 293, 2744-2754.

  24. Choi, H.J.#, Kim, I.#, Lee, H.J., Park, Y.H., Suh, J.Y.* & Han, J.Y.* (2018) Chicken NANOG self-associates via a novel folding-upon-binding mechanism. FASEB J. 32, 2563-2573.

  25. Jeong, M., Kim, I., Kim, G., Ka, D., Kim, N.K., Bae, E., Ryu, K.S.* & Suh, J.Y.* (2018) Solution structure and dynamics of Xanthomonas albilineans Cas2 for the mechanistic insight of nuclease activity. FEBS Lett. 592, 147-155.

  26. Ka, D.#, An, S.Y.#, Suh, J.Y.* & Bae E.* (2018) Crystal structure of an anti-CRISPR protein, AcrIIA1. Nucleic Acids Res. 46, 485-492.

  27. Lee, H.J., Lee, K.Y., Jung, K.M., Park, K.J., Lee, K.O., Suh, J.Y., Yao, Y., Nair, V., & Han, J.Y.* (2017) Precise gene editing of chicken Na+/H+ exchange type 1 (chNHE1) confers resistance to avian leukosis virus subgroup J (ALV-J). Dev. Comp. Immunol. 77, 340-349.

  28. Lee, K.O.#, Yun, Y.J.#, Kim, I. & Suh, J.Y.* (2017) Dimerization facilitates the conformational transitions for enzyme I autophosphorylation in an allosteric manner. FEBS Open Bio 7, 1208-1216.

  29. Ka, D., Hong, S., Jeong, U., Jeong, M., Suh, N., Suh, J.Y. & Bae, E.* (2017) Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity. Struct. Dynam. 4, 054701.

  30. Lee, K.O. & Suh, J.Y.* (2017) Backbone Assignment of Phosphorylated Cytoplasmic Domain B of Mannitol Transporter IIMtl in Thermoanaerobacter Tengcongensis. J. Kor. Mag. Reson. Soc. 21, 20-25.

  31. Kim, I.*, Lee, K.O.*, Yun, Y.J., Jung, J.Y., Kim, E.H., Cheong, H., Ryu, K.S., Kim, N.K. & Suh, J.Y.* (2017) Biophysical characterization of Ca2+-binding of S100A5 and Ca2+-induced interaction with RAGE. Biochem. Biophys. Res. Commun. 483, 332-338.

  32. Lee, K.O., Kim, E.H., Kim, G., Jung, J.Y., Katayama, S., Nakamura, S. & Suh, J.Y.* (2016) Biophysical characterization of the domain association between cytosolic A and B domains of the mannitol transporter enzymes IIMtl in the presence and absence of a connecting linker. Protein Sci. 25, 1803-1811.

  33. Kim, K., Heo, D.H., Kim, I., Suh, J.Y. & Kim, M.* (2016) Exosome Cofactors Connect Transcription Termination to RNA Processing by Guiding Terminated Transcripts to the Appropriate Exonuclease within the Nuclear Exosome. J. Biol. Chem. 291, 13229-13242.

  34. Han, M. & Suh, J.Y.* (2015) Dynamics of the mobile insert helix in the domain III-IV of Aux/IAA17 probed by site-directed spin labeling and paramagnetic NMR spectroscopy. J. Kor. Mag. Reson. Soc. 19, 61-66.

  35. Lee, K.O. & Suh, J.Y.* (2015) 1H, 15N, and 13C backbone assignments and secondary structure of the cytoplasmic domainA of mannitol trasporter IIMannitol from Thermoanaerobacter Tencongensis phosphotransferase system. J. Kor. Mag. Reson. Soc. 19, 42-48.

  36. Jeon, W., Ban, C., Park, G., Yu, T.K., Suh, J.Y., Woo, H.C. & Kim, D.H.* (2015) Catalytic Hydrothermal Conversion of Macroalgae-derived Alginate: Effect of pH on Production of Furfural and Valuable Organic Acids under Subcritical Water Conditions. J. Mol. Catal. A 399, 106-113.

  37. Han, M., Park, Y., Kim, I., Kim, E.H., Yu, T.K., Rhee, S.* & Suh, J.Y.* (2014) Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17. Proc. Natl. Acad. Sci. USA 111, 18613-18618.

  38. Suh, J.Y.*, Yu, T.K., Yun, Y.J. & Lee, K.O. (2014) NMR Studies on Transient Protein Complexes: Perspectives. J. Kor. Magn. Reson. Soc. 18, 1-4.

  39. Yu, T.K., Shin, S.A., Kim, E.H., Kim, S., Ryu, K.S., Cheong, H., Ahn, H.C., Jon, S. & Suh, J.Y.* (2014) An Unusual Protein-Protein Interaction through Coupled Unfolding and Binding. Angew. Chem. Int. Ed. Engl. 53 9784-9787.
    - Highlighted as and inside back cover picture

  40. Im, H., Jang, S.B., Pathak, C., Yang, Y.J., Yoon, H.J., Yu, T.K., Suh, J.Y. & Lee, B.J.* (2014) Crystal structure of toxin HP0892 from Helicobacter pylori with two Zn(II) at 1.8 Å resolution. Protein Sci. 23, 819-832.

  41. Farrand, L., Kim, J.Y., Byun, S., Im-Aram, A., Lee, J., Suh, J.Y., Lee, K.W., Lee, H.J. & Tsang, B.K.* (2014) The diarylheptanoid hirsutenone sensitizes chemoresistant ovarian cancer cells to cisplatin via modulation of Apoptosis Inducing Factor and X-linked Inhibitor of Apoptosis. J. Biol. Chem. 289, 1723-1731.

  42. Farrand, L., Kim, J.Y., Im-Aram, A., Suh, J.Y., Lee, H.J., & Tsang, B.K.* (2013) An Improved Quantitative Approach for the Assessment of Mitochondrial Fragmentation in Chemoresistant Ovarian Cancer Cells. PLoS ONE 8, e74008.

  43. Yun, Y.J., Choi, B.S., Kim, E.H. & Suh, J.Y.* (2013) Thermodynamic Dissection of Large-Scale Domain Motions Coupled with Ligand Binding of Enzyme I. Protein Sci. 22, 1602-1611.

  44. Farrand, L., Byun, S., Kim, J.Y., Im-Aram, A., Lee, J., Lim, S., Lee, K.W., Suh, J.Y., Lee, H.J. & Tsang, B. K.* (2013) Piceatannol enhances cisplatin sensitivity in ovarian cancer via modulation of p53, XIAP and mitochondrial fission. J. Biol. Chem. 288, 23740-23750.

  45. Yu, T.K., Yun, Y.J., Lee, K.O. & Suh, J.Y.* (2013) Probing Target Search Pathways during Protein-Protein Association by Rational Mutations based on Paramagnetic Relaxation Enhancement. Angew. Chem. Int. Ed. Engl. 52, 3384-3388.

  46. Yun, Y.J. & Suh, J.Y.* (2012) Calorimetric and spectroscopic investigation of the interaction between the C-terminal domain of Enzyme I and its ligands. Protein Sci. 21, 1726-1733.

  47. Ali, A.Y., Farrand, L., Kim, J.Y., Byun, S., Suh, J.Y., Lee, H.J. & Tsang, B.K.* (2012) Molecular determinants of ovarian cancer chemoresistance: New insights into an old conundrum. Ann. N.Y. Acad. Sci. 1271, 58-67.

  48. Yu, T.K., Yun, Y.J., Lee, K.O., Ahn, K.J. & Suh, J.Y.* (2012) Active Site Phosphoryl Groups in the Biphosphorylated Phosphotransferase Complex Reveal Dynamics in a Millisecond Time Scale. FEBS Lett. 586, 1439-1444.

  49. Kim, S., Kim, D., Jung, H.H., Lee, I. H, Kim, J.I., Suh, J.Y. & Jon, S.* (2012) Bio-Inspired Design and Potential Biomedical Applications of a Novel Class of High-Affinity Peptides. Angew. Chem. Int. Ed. Engl. 51, 1890-1894.

  50. Kang, H., Suh, J.Y., Jung, Y.S., Jung, J.W., Kim, M.K. & Chung J.H.* (2011) Peptide Switch Is Essential for Sirt1 Deacetylase Activity. Mol. Cell 44, 203-213.

  51. Schwieters, C.D., Suh, J.Y., Grishaev, A., Ghirlando, R., Takayama, Y. & Clore, G.M. (2010) Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small and wide angle X-ray scattering. J. Am. Chem. Soc. 132, 13026-13045. - Highlighted in (2010) 88, 12.

  52. Doucleff, M., Fawzi, N., Suh, J.Y. & Clore, G.M. (2010) Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements. Proc. Natl. Acad. Sci. USA. 107, 1379-1384. - Highlighted in

  53. Ryabov, Y., Suh, J.Y., Grishaev, A., Clore, G.M. & Schwieters, C.D. (2009) Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes. J. Am. Chem. Soc. 131, 9522-9531.
  54. Tang, C., Louis, J.M., Aniana, A., Suh, J.Y. & Clore, G.M. (2008) Visualizing early events in HIV-1 protease auto-processing by paramagnetic NMR. Nature 455, 693-696. - Highlighted in

  55. Suh, J.Y., Cai, M. & Clore, G.M. (2008) Impact of phosphorylation on structure and thermodynamics of the interaction between the N-terminal domain of enzyme I and the histidine phosphocarrier protein of the bacterial phosphotransferase system. J. Biol. Chem. 283, 18980-18989.

  56. Suh, J.Y., Tang, C. & Clore, G.M. (2007) Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement. J. Am. Chem. Soc. 129, 12954- 12955.

  57. Suh, J.Y., Iwahara, J. & Clore, G.M. (2007) Intramolecular domain-domain association/ dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled. Proc. Natl. Acad. Sci. USA. 104, 3153-3158.

  58. Cai, M., Ying, F., Suh, J.Y., Louis, J.M., Ghirlando, R., Craigie, R. & Clore, G.M. (2007) Solution NMR structure of the barrier-to-autointegration factor/emerin complex. J. Biol. Chem. 282, 14525-14535.

  59. Suh, J.Y., Cai, M., Williams Jr., D.C. & Clore, G.M. (2006) Solution structure of a post-transition state analog of the phosphotransfer reaction between the A and B cytoplasmic domains of the mannitol transporter II mannitol of the Escherichia coli phosphotransferase system. J. Biol. Chem. 281, 8939-8949.

  60. Suh, J.Y., Tang, C., Cai, M., & Clore, G.M. (2005) Visualization of the phosphorylated active site of the loop of the cytoplamic B domain of the mannitol transporter IIMannitol of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings. J. Mol. Biol. 353, 1129-1136.

  61. Williams Jr., D.C., Cai, M., Suh, J.Y., Peterkofsky, A. & Clore, G.M. (2005) Solution NMR structure of the 48 kDa IIAmannose-HPr complex of the Escherichia coli mannose phosphotransferase system. J. Biol. Chem. 280, 20775-20784.

  62. Suh, J.Y. & Choi, B.S. (2004) Implications of the periodicity in NMR chemical shifts and temperature coefficients of amide protons in helical peptides. J. Kor. Mag. Reson. Soc. 8, 127-138.

  63. Suh, J.Y., Spyracopoulos, L., Keizer, D.W., Irvin, R.T. & Sykes, B.D. (2001) Backbone dynamics of receptor binding and antigenic regions of a Pseudomonas aeruginosa pilin monomer. Biochemistry 40, 3985-3995.

  64. Keizer, D.W., Kalisiak, M., Crump., M.P., Suh, J.Y., Irvin, R.T. & Sykes, B.D. (2001) Assignments of 1H and 15N resonances of the Pseudomonas aeruginosa K122-4 pilin monomer. J. Biomol. NMR 19, 385-386.

  65. Suh, J.Y., Lee, Y.T., Park, C.B., Lee, K.H., Kim, S.C. & Choi, B.S. "Structural and functional implications of a proline residue in the antimicrobial peptide gaegurin. Eur. J. Biochem. 266, 665-674.

  66. Lee, Y.T., Kim, D.H., Suh, J.Y., Chung, J.H., Lee, B.L., Lee, Y. & Choi, B.S. (1999) Structural characteristics of tenecin 3, an insect antifungal protein. Biochem. Mol. Biol. Int. 47, 369-376.

  67. Suh, J.Y., Lee, K.H., Chi, S.W., Hong, S.Y., Choi, B.W., Moon, H.M. & Choi, B.S. (1996) Unusually stable helical kink in the antimicrobial peptide - a derivative of gaegurin. FEBS Lett. 392, 309-312.

  68. Suh, J.Y. & Choi, B.S. (1996) Implication of secondary structure of bradykinin in membrane mimic solution investigated by NMR spectroscopy. Bull. Korean. Chem. Soc. 17, 671-673.

  69. Chi, S.W., Yi, G.S., Suh, J.Y., Choi, B.S. & Kim, H. (1995) Structures of revertant signal sequences of Escherichia coli ribose binding protein. Biophys J. 69, 2703-2709.